The pairwise homoplasy index

Webb18 feb. 2024 · Meanwhile, the pairwise homoplasy index (PHI) [ 40] statistic provided highly significant evidence for recombination within M. luteus species ( p = 0.00). Fig. 4 Recombination in M. luteus. a Phylogenetic network inferred with the concatenation of single-copy core genes. Lines between splits show where recombination has occurred. Webb30 juli 2024 · SUPPLEMENTARY INFORMATION Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen Oscar A. MacLean 1,#, Spyros Lytras, Steven Weaver2, Joshua B. Singer1, Maciej F. Boni3, Philippe Lemey4, Sergei L. Kosakovsky Pond2,*, David L. Robertson1,* 1MRC-University of Glasgow Centre …

Colletotrichum caudatum s.l. is a species complex - IMA Fungus

Webb14 feb. 2024 · Morphological studies and multilocus phylogenetic analyses with the concatenated sequences of the internal transcribed spacer, glyceraldehyde-3-phosphate dehydrogenase, chitin synthase, actin, beta-tubulin, calmodulin, and the intergenic region between Apn2 and Mat1-2-1, as well as a pairwise homoplasy index, test placed the … WebbIn this tale as old as time, learn how the unbreakable bond of INDEX and MATCH can overcome such VLOOKUP problems . . . even when looking up to the left of a lookup value column! small run book printing australia https://gravitasoil.com

Baseline genetic distinctiveness supports structured populations …

Webb23 juni 2015 · The pairwise homoplasy index (PHI) and split decomposition tree obtained with Splitstree four software were also indicators of recombination events. Phylogenetic analysis. The e-BURST V3 software was used to analyze the relation among STs and to divide them into groups clonal complexes (CC). Webb20 jan. 2016 · They have a homoplasy degree of 0 in all figures. Additional tests for recombination were also performed, namely the estimation of the pairwise homoplasy index (Bruen, Philippe, and Bryant 2006) and the triplet test implemented in 3Seq (Boni, Posada, and Feldman 2007). 2.4 LD decay Webb17 dec. 2024 · Recombination within FOSC was tested using the pairwise homoplasy index and divergence ages were estimated by molecular dating. We called SNPs from … small run book printers

Biology Free Full-Text Historical Biogeography of Earwigs

Category:Debian -- Details of package phipack in sid

Tags:The pairwise homoplasy index

The pairwise homoplasy index

Docker

WebbThe results of the pairwise homoplasy index (PHI) test for closely related species of Coniella vitis using both LogDet transformation and splits decomposition. PHI test … Webb11 mars 2024 · 采用两个重组方法分析，先应用SplitsTree 构建系统发育网络并计算成对同质性指数（pairwise homoplasy index, PHI查)，随后应用RDP软件包中的7种方 …

The pairwise homoplasy index

Did you know?

Webb11 juli 2024 · A pairwise homoplasy index test using a 6-gene dataset (ACT, CAL, GAPDH, GS, ITS, and TUB2) was performed to determine the recombination level between C. ledongense and the closely related... Webb22 okt. 2014 · START was also used to determine that the GC content in the MLST genes was comparable to that of the whole-genome GC content. To detect recombination within the Y. enterocolitica MLST data, SplitsTree 4.2 was used to compute the pairwise homoplasy index (PHI).

WebbDistance matrices are used in phylogeny as non-parametric distance methods and were originally applied to phenetic data using a matrix of pairwise distances. These distances are then reconciled to produce a tree (a phylogram, with informative branch lengths).The distance matrix can come from a number of different sources, including measured …

WebbPage topic: "Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa - Oxford Academic". Created by: Leroy Patterson. Language: english. Webb28 sep. 2011 · Statistical significance of the proportion of variance associated with the fixation index, F ST was determined through permutation tests against a null distribution generated from the data in GenAlEx. The number of migrants (N m) between each population pair was calculated from genetic distances through the equation N m = (1 − F …

Webbpairwise homoplasy index; PDA potato dextrose agar; SSU small subunit ribosomal RNA gene; YMA yeast malt agar. Table 3. Data used for phylogenetic analysis in this study and their corresponding GenBank accession numbers. Type species are denoted by T. Sequences derived in this study are shown in bold.

Webb19 aug. 2024 · Pairwise homoplasy index (PHI) test of Fusarium rosicola and closely related F. breve using both LogDet transformation and splits decomposition. PHI test … highmark wholecare provider phoneWebb26 okt. 2016 · The results of pairwise homoplasy index (PHI) test of closely related species using both LogDet transformation and splits decomposition. PHI test results (Φw) <0.05 indicate significant... highmark wholecare provider numberWebb1 juli 2024 · Moreover, the pairwise homoplasy index test and the comparison of morphological and ecological characters, have strengthened the fact that reproductive isolation and geographical or host plant barriers to gene flow are absent. This study has also demonstrated that the identification of species in Diaporthe might . Declaration of … highmark wholecare ruby planWebb1 apr. 2006 · The term “pairwise homoplasy index” refers to the fact that the refined incompatibility score can be interpreted as the minimum number of convergent or recurrent mutations (homoplasies) necessarily present on any tree describing the … small run clothing manufacturers baliWebb24 feb. 2024 · Given the multiple parallel paths and the significant pairwise homoplasy index (PHI) p ≤ 0.0001, recombination likely contributed to the emergence of STs in clades II and III, which appear to ... small rump roast recipes in ovenWebb7 juli 2024 · A pairwise homoplasy index (PHI) test was performed in SplitsTree (version 4.1.4.4) using the Kimura’s two parameter (K2P) models for low genetic distance … small ruminants in the philippinesWebb16 aug. 2016 · The Pairwise Homoplasy Index (PHY) test implemented in SplitsTree v. 4.13.1 and the pairwise linkage disequilibrium (D) available in the software DnaSP v. 5.10 were also used to detect the presence of recombination. … small run book printing